Summarise and Visualise Characteristics of Patients in the OMOP CDM

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Documentation for package ‘CohortCharacteristics’ version 1.0.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

availablePlotColumns	Available columns to use in 'facet' and 'colour' arguments in plot functions.
availableTableColumns	Available columns to use in 'header', 'groupColumn' and 'hide' arguments in table functions.
benchmarkCohortCharacteristics	Benchmark the main functions of CohortCharacteristics package.
mockCohortCharacteristics	It creates a mock database for testing CohortCharacteristics package
plotCharacteristics	Create a ggplot from the output of summariseCharacteristics.
plotCohortAttrition	create a ggplot from the output of summariseLargeScaleCharacteristics.
plotCohortCount	Plot the result of summariseCohortCount.
plotCohortOverlap	Plot the result of summariseCohortOverlap.
plotCohortTiming	Plot summariseCohortTiming results.
plotComparedLargeScaleCharacteristics	create a ggplot from the output of summariseLargeScaleCharacteristics.
plotLargeScaleCharacteristics	create a ggplot from the output of summariseLargeScaleCharacteristics.
summariseCharacteristics	Summarise characteristics of cohorts in a cohort table
summariseCohortAttrition	Summarise attrition associated with cohorts in a cohort table
summariseCohortCodelist	Summarise the cohort codelist attribute
summariseCohortCount	Summarise counts for cohorts in a cohort table
summariseCohortOverlap	Summarise overlap between cohorts in a cohort table
summariseCohortTiming	Summarise timing between entries into cohorts in a cohort table
summariseLargeScaleCharacteristics	This function is used to summarise the large scale characteristics of a cohort table
tableCharacteristics	Format a summarise_characteristics object into a visual table.
tableCohortAttrition	Create a visual table from the output of summariseCohortAttrition.
tableCohortCodelist	Create a visual table from <summarised_result> object from 'summariseCohortCodelist()'
tableCohortCount	Format a summarise_characteristics object into a visual table.
tableCohortOverlap	Format a summariseOverlapCohort result into a visual table.
tableCohortTiming	Format a summariseCohortTiming result into a visual table.
tableLargeScaleCharacteristics	Explore and compare the large scale characteristics of cohorts
tableTopLargeScaleCharacteristics	Visualise the top concepts per each cdm name, cohort, statification and window.