Spatial Transcriptomics Distance Calculation and Visualization
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Documentation for package ‘STDistance’ version 0.6.4
Help Pages
| calculate_correlations | Perform correlation analysis between spatial features and distance metrics with visualization |
| calculate_nearest_distances | Calculate nearest distances between cell types |
| distance_results | distance_results |
| metadata | Metadata |
| normalize_spatial | Normalize spatial coordinates |
| plot_distance_boxplot | Visualize Nearest Neighbor Distances with Boxplot and Mean ± SEM |
| plot_radial_distance | Radial Distance Visualization with Collision Avoidance |
| posi | posi |
| tissue_posi | tissue_posi |
| tissue_posi_normalized | tissue_posi_normalized |
| visualize_spatial_gradient | Visualize spatial network with expression gradient |
| visualize_spatial_multinetwork | Visualize spatial relationships between multiple cell types |
| visualize_spatial_network | Visualize spatial relationships between cell types |