Mixture Hidden Markov Models for Social Sequence Data and Other Multivariate, Multichannel Categorical Time Series

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Documentation for package ‘seqHMM’ version 2.0.0

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B C D E F G H L M N P R S T U V

seqHMM-package The seqHMM package

-- B --

biofam3c Three-channel biofam data
bootstrap_coefs Bootstrap Sampling of NHMM Coefficients
bootstrap_coefs.mnhmm Bootstrap Sampling of NHMM Coefficients
bootstrap_coefs.nhmm Bootstrap Sampling of NHMM Coefficients
build_hmm Build a Hidden Markov Model
build_lcm Build a Latent Class Model
build_mhmm Build a Mixture Hidden Markov Model
build_mm Build a Markov Model
build_mmm Build a Mixture Markov Model

-- C --

cluster_names Get Cluster Names from Mixture HMMs
cluster_names<- Set Cluster Names for Mixture Models
coef.mnhmm Get the Estimated Regression Coefficients of Non-Homogeneous Hidden Markov Models
coef.nhmm Get the Estimated Regression Coefficients of Non-Homogeneous Hidden Markov Models
colorpalette Color palettes

-- D --

data_to_stslist Transform TraMineR's state sequence object to data.table and vice versa

-- E --

estimate_mnhmm Estimate a Mixture Non-homogeneous Hidden Markov Model
estimate_nhmm Estimate a Non-homogeneous Hidden Markov Model

-- F --

fanhmm_leaves A feedback-augmented non-homogeneuous hidden Markov Model for leaves data
fit_model Estimate Parameters of (Mixture) Hidden Markov Models and Their Restricted Variants
forward_backward Forward and Backward Probabilities for Hidden Markov Model
forward_backward.hmm Forward and Backward Probabilities for Hidden Markov Model
forward_backward.mhmm Forward and Backward Probabilities for Hidden Markov Model
forward_backward.mnhmm Forward and Backward Probabilities for Hidden Markov Model
forward_backward.nhmm Forward and Backward Probabilities for Hidden Markov Model

-- G --

get_cluster_probs Extract the Prior Cluster Probabilities of MHMM or MNHMM
get_cluster_probs.mhmm Extract the Prior Cluster Probabilities of MHMM or MNHMM
get_cluster_probs.mnhmm Extract the Prior Cluster Probabilities of MHMM or MNHMM
get_emission_probs Extract the Emission Probabilities of Hidden Markov Model
get_emission_probs.hmm Extract the Emission Probabilities of Hidden Markov Model
get_emission_probs.mhmm Extract the Emission Probabilities of Hidden Markov Model
get_emission_probs.mnhmm Extract the Emission Probabilities of Hidden Markov Model
get_emission_probs.nhmm Extract the Emission Probabilities of Hidden Markov Model
get_initial_probs Extract the Initial State Probabilities of Hidden Markov Model
get_initial_probs.hmm Extract the Initial State Probabilities of Hidden Markov Model
get_initial_probs.mhmm Extract the Initial State Probabilities of Hidden Markov Model
get_initial_probs.mnhmm Extract the Initial State Probabilities of Hidden Markov Model
get_initial_probs.nhmm Extract the Initial State Probabilities of Hidden Markov Model
get_marginals Compute the Marginal Probabilities from NHMMs
get_transition_probs Extract the State Transition Probabilities of Hidden Markov Model
get_transition_probs.hmm Extract the State Transition Probabilities of Hidden Markov Model
get_transition_probs.mhmm Extract the State Transition Probabilities of Hidden Markov Model
get_transition_probs.mnhmm Extract the State Transition Probabilities of Hidden Markov Model
get_transition_probs.nhmm Extract the State Transition Probabilities of Hidden Markov Model
gridplot Plot Multidimensional Sequence Plots in a Grid

-- H --

hidden_paths Most Probable Paths of Hidden States
hidden_paths.hmm Most Probable Paths of Hidden States
hidden_paths.mhmm Most Probable Paths of Hidden States
hidden_paths.mnhmm Most Probable Paths of Hidden States
hidden_paths.nhmm Most Probable Paths of Hidden States
hmm_biofam Hidden Markov model for the biofam data
hmm_mvad Hidden Markov model for the mvad data

-- L --

leaves Synthetic data on fathers' parental leaves in Finland
logLik.hmm Log-likelihood of a Hidden Markov Model
logLik.mhmm Log-likelihood of a Hidden Markov Model
logLik.mnhmm Log-likelihood of a Non-homogeneous Hidden Markov Model
logLik.nhmm Log-likelihood of a Non-homogeneous Hidden Markov Model

-- M --

mc_to_sc Transform a Multichannel Hidden Markov Model into a Single Channel Representation
mc_to_sc_data Merge Multiple Sequence Objects into One (from Multichannel to Single Channel Data)
mhmm_biofam Mixture hidden Markov model for the biofam data
mhmm_mvad Mixture hidden Markov model for the mvad data
most_probable_cluster Extract Most Probable Cluster for Each Sequence
mssplot Interactive Stacked Plots of Multichannel Sequences and/or Most Probable Paths for Mixture Hidden Markov Models

-- N --

nobs.hmm Number of Observations in Hidden Markov Model
nobs.mhmm Number of Observations in Hidden Markov Model
nobs.mnhmm Number of Observations in Hidden Markov Model
nobs.nhmm Number of Observations in Hidden Markov Model

-- P --

plot.hmm Plot hidden Markov models
plot.mhmm Interactive Plotting for Mixed Hidden Markov Model (mhmm)
plot.ssp Stack Multichannel Sequence Plots and/or Most Probable Paths Plots from Hidden Markov Models
plot_colors Plot Colorpalettes
posterior_cluster_probabilities Extract Posterior Cluster Probabilities
posterior_probs Posterior Probabilities for Hidden Markov Models
posterior_probs.hmm Posterior Probabilities for Hidden Markov Models
posterior_probs.mhmm Posterior Probabilities for Hidden Markov Models
posterior_probs.mnhmm Posterior Probabilities for Hidden Markov Models
posterior_probs.nhmm Posterior Probabilities for Hidden Markov Models
predict.mnhmm Predictions from Non-homogeneous Hidden Markov Models
predict.nhmm Predictions from Non-homogeneous Hidden Markov Models
print.hmm Print Method for a Hidden Markov Model
print.mhmm Print Method for a Hidden Markov Model
print.mnhmm Print Method for a Hidden Markov Model
print.nhmm Print Method for a Hidden Markov Model
print.summary_mhmm Print Method for a Hidden Markov Model

-- R --

return_msg Convert return code from estimate_nhmm and estimate_mnhmm to text

-- S --

separate_mhmm Reorganize a mixture hidden Markov model to a list of separate hidden Markov models (covariates ignored)
seqHMM The seqHMM package
seqHMM-deprecated Deprecated function(s) in the seqHMM package
simulate_emission_probs Simulate Parameters of Hidden Markov Models
simulate_hmm Simulate hidden Markov models
simulate_initial_probs Simulate Parameters of Hidden Markov Models
simulate_mhmm Simulate Mixture Hidden Markov Models
simulate_mnhmm Simulate Mixture Non-homogeneous Hidden Markov Models
simulate_nhmm Simulate Non-homogeneous Hidden Markov Models
simulate_transition_probs Simulate Parameters of Hidden Markov Models
sort_sequences Sort sequences in a sequence object
ssp Define Arguments for Plotting Multichannel Sequences and/or Most Probable Paths from Hidden Markov Models
ssplot Stacked Plots of Multichannel Sequences and/or Most Probable Paths from Hidden Markov Models
stacked_sequence_plot Stacked Sequence Plots of Multichannel Sequences and/or Most Probable Paths from Hidden Markov Models
state_names Get State Names of Hidden Markov Model
state_names.hmm Get State Names of Hidden Markov Model
state_names.mhmm Get State Names of Hidden Markov Model
state_names.mnhmm Get State Names of Hidden Markov Model
state_names.nhmm Get State Names of Hidden Markov Model
state_names<- Get State Names of Hidden Markov Model
state_names<-.hmm Get State Names of Hidden Markov Model
state_names<-.mhmm Get State Names of Hidden Markov Model
state_names<-.mnhmm Get State Names of Hidden Markov Model
state_names<-.nhmm Get State Names of Hidden Markov Model
stslist_to_data Transform TraMineR's state sequence object to data.table and vice versa
summary.mhmm Summary method for mixture hidden Markov models
summary.mnhmm Summary method for mixture non-homogenous hidden Markov models

-- T --

trim_model Trim Small Probabilities of Hidden Markov Model

-- U --

update.mnhmm Update Covariate Values of NHMM
update.nhmm Update Covariate Values of NHMM

-- V --

vcov.mhmm Variance-Covariance Matrix for Coefficients of Covariates of Mixture Hidden Markov Model