Modelling Phylogenetic Signals using Eigenvector Maps
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Documentation for package ‘MPSEM’ version 0.6-1
Help Pages
| MPSEM-package | Modelling Phylogenetic Signals using Eigenvector Maps |
| add.edge | MPSEM graph Manipulation Functions |
| add.vertex | MPSEM graph Manipulation Functions |
| as.data.frame.PEM | Class and Methods for Phylogenetic Eigenvector Maps (PEM) |
| collapse.vertex | MPSEM graph Manipulation Functions |
| dstGraph | Distance-Based Directed Graph |
| EvolveOptimMarkovTree | Simulate the Evolution of a Quantitative Trait |
| getAncGraphLocations | Phylogenetic Eigenvector Maps |
| getGraphLocations | Phylogenetic Eigenvector Maps |
| graph | Class and Method for Directed Graphs |
| graph-class | Class and Method for Directed Graphs |
| graph-functions | MPSEM graph Manipulation Functions |
| InflMat | Phylogenetic Eigenvector Maps |
| lm-utils | Linear Modelling Utility Functions |
| lmforwardsequentialAICc | Linear Modelling Utility Functions |
| lmforwardsequentialsidak | Linear Modelling Utility Functions |
| Locations2PEMscores | Phylogenetic Eigenvector Maps |
| OUvar | Simulate the Evolution of a Quantitative Trait |
| PEM | Class and Methods for Phylogenetic Eigenvector Maps (PEM) |
| PEM-class | Class and Methods for Phylogenetic Eigenvector Maps (PEM) |
| PEM-functions | Phylogenetic Eigenvector Maps |
| PEM.build | Phylogenetic Eigenvector Maps |
| PEM.fitSimple | Phylogenetic Eigenvector Maps |
| PEM.forcedSimple | Phylogenetic Eigenvector Maps |
| PEM.updater | Phylogenetic Eigenvector Maps |
| PEMvar | Simulate the Evolution of a Quantitative Trait |
| PEMweights | Phylogenetic Eigenvector Maps |
| Phylo2DirectedGraph | MPSEM graph Manipulation Functions |
| pop.graph | MPSEM graph Manipulation Functions |
| predict.PEM | Class and Methods for Phylogenetic Eigenvector Maps (PEM) |
| print.graph | Class and Method for Directed Graphs |
| print.PEM | Class and Methods for Phylogenetic Eigenvector Maps (PEM) |
| rm.edge | MPSEM graph Manipulation Functions |
| rm.vertex | MPSEM graph Manipulation Functions |
| simulation | Simulate the Evolution of a Quantitative Trait |
| trait | Simulate the Evolution of a Quantitative Trait |
| trait-simulator | Simulate the Evolution of a Quantitative Trait |
| TraitOUsimTree | Simulate the Evolution of a Quantitative Trait |
| TraitVarGraphSim | Simulate the Evolution of a Quantitative Trait |
| utils | Linear Modelling Utility Functions |