Testing for Population Trends Using Low-Cost Ecological Count Data

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Documentation for package ‘birp’ version 0.0.5

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

birp-package	Testing for Population Trends Using Low-Cost Ecological Count Data
assess_NB	Assess whether a Poisson model can replace the Negative Binomial model
birp	Create a 'birp' Object
birp_data	Create a birp_data Object from Count and Effort Matrices
birp_data_from_data_frame	Create a 'birp_data' Object from a Data Frame or List of Data Frames
birp_data_from_file	Create a birp_data Object from File(s)
birp_from_command_line	Create a birp Object from Command-Line Output Files
plot.birp	Plot posterior distributions of gamma parameters
plot.birp_data	Plot a birp_data Object
plot_epoch_pair	Plot joint posterior of two gamma parameters
plot_mcmc	Plot MCMC Traces and Posterior Densities
plot_trend	Plot Posterior Trend Estimates
print.birp	Print a birp object
print.birp_data	Print a birp_data object Prints a summary of a 'birp_data' object, including the number of methods, locations, control-intervention (CI) groups, and timepoints, as well as the names or identifiers for each.
simulate_birp	Simulate Data for BIRP Models Generates simulated count data using the BIRP model framework with user-defined parameters.
simulate_birp_from_results	This function simulates a birp_data object using all parameter estimates, dimensionality (methods, locations, timepoints) and the total number of counts nu_ij of a birp object
summary.birp	Summary method for birp objects
summary.birp_data	Summarize a birp_data object