| BeeGUTS-package | 'BeeGUTS' package; a package to perform GUTS modelling for Bee experiments. |
| BeeGUTS | 'BeeGUTS' package; a package to perform GUTS modelling for Bee experiments. |
| betacyfluthrinChronic | Survival datasets for _Honey bees_ exposed to constant concentration of Betacyfluthrin for 10 days. |
| concAC | Recalculate the concentrations for the acute contact tests for bees |
| concAO | Recalculate concentration for the acute oral tests for bees |
| concCst | Recalculate the concentrations for the chronic oral tests for bees from mg a.s./kg feed to mug/bee |
| correlation_plot | Plotting of correlation plots for 'beeSurvFit' objects |
| criteriaCheck | Computes PPC and NRMSE as defined in EFSA 2018 |
| dataGUTS | Read and format the data for the BeeGUTS model |
| fitBeeGUTS | Fit a GUTS model for bees survival analysis using Bayesian Inference (stan) |
| fitBetacyfluthrin_Chronic | Model calibration results datasets for _Honey bees_ exposed to constant concentration of Betacyfluthrin for 10 days. |
| LCx | Predict the Lethal Concentration method at which x\% of organisms die for any specified time-point for a 'beeSurvFit' object |
| LCx.beeSurvFit | Predict the Lethal Concentration at which x\% of organisms die for any specified time-point for a 'beeSurvFit' object |
| plot.beeSurvData | Plotting method for 'beeSurvData' objects |
| plot.beeSurvFit | Plotting method for 'beeSurvFit' objects |
| plot.beeSurvPred | Plotting method for 'beeSurvPred' objects |
| plot.beeSurvValidation | Plotting method for 'beeSurvValidation' objects |
| plot.ppc | Plotting method for 'ppc' objects |
| ppc | Generates an object to be used in posterior predictive check for 'beeSurvFit', 'beeSurvPred' |
| ppc.beeSurvFit | Posterior predictive check method for 'beeSurvFit' objects |
| ppc.beeSurvValidation | Posterior predictive check method for 'beeSurvValidation' objects |
| predict.beeSurvFit | Predict method for 'beeSurvFit' objects |
| predict2 | Predict method for 'beeSurvFit' objects |
| priorposterior_plot | Plotting of prior and posterior plots for 'beeSurvFit' objects |
| ShortTimeEffects | Perform comparison between LLD50 at 2 days and at 10 days as for EFSA revised guideline (2023) - Section 6.6 |
| ShortTimeEffects.beeSurvFit | Calculate the presence of Time Reinforced Toxicity for the compound from the calibrated model 'beeSurvFit' object. |
| summary.beeSurvFit | Summary of 'beeSurvFit' objects |
| summary.LCx | Summary of 'LCx' objects |
| traceplot | Plotting method for traces and densities for 'beeSurvFit' objects |
| traceplot.beeSurvFit | Plotting method for traces and densities for 'beeSurvFit' objects |
| TRT | Perform the extrapolation of the LDD50 to 27 days and check the presence of reinforced toxicity as for EFSA revised guideline (2023) - Annex G |
| TRT.beeSurvFit | Calculate the presence of Time Reinforced Toxicity for the compound from the calibrated model 'beeSurvFit' object. |
| validate | Validation method for 'beeSurvFit ' objects |
| validate.beeSurvFit | Validate method for 'beeSurvFit' objects |