| analyseNetwork | General properties of the network |
| beatAML | beatAML |
| drugComb | drugComb |
| extractSubMatrix | Extract the non-missing submatrices from a given matrix. |
| findCluster | Find clusters in projected unipartite networks |
| herbIngredient | herbIngredient |
| NIMAA | NIMAA: A package for Nominal Data Mining Analysis. |
| nominalAsBinet | Convert nominal data to a bipartite network |
| plotBipartite | Plot the bipartite network and the corresponding projected networks |
| plotBipartiteInteractive | Use the incidence matrix to plot an interactive bipartite network |
| plotCluster | Plot the clusters in one projection of the bipartite network |
| plotIncMatrix | Plot the incidence matrix. |
| predictEdge | Edge prediction of weighted bipartite network. |
| robertson | robertson |
| scoreCluster | Score the cluster analysis in a projected network based on additional internal measures. |
| validateCluster | Validate the cluster analysis in a projected network based on additional external measures. |
| validateEdgePrediction | Validate and compare edge prediction methods. |
| visualClusterInBipartite | Plot the bipartite graph with color coding for different clusters in both parts |