A Comprehensive Interface for Accessing the Protein Data Bank

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Documentation for package ‘rPDBapi’ version 2.1.1

• DESCRIPTION file.

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add_property	Add or Merge Properties for RCSB PDB Data Fetching
autoresolve_sequence_type	Automatically Determine the Sequence Type
ChemicalOperator	Create a Chemical Search Operator for SMILES/InChI Descriptors
ComparisonOperator	Create a Comparison Search Operator
ContainsPhraseOperator	Create a Contains Phrase Search Operator
ContainsWordsOperator	Create a Contains Words Search Operator
data_fetcher	Fetch RCSB PDB Data Based on Specified Criteria
DefaultOperator	Create a Default Search Operator
describe_chemical	Describe Chemical Compound from RCSB PDB
ExactMatchOperator	Create an Exact Match Search Operator
ExistsOperator	Create an Existence Search Operator
fetch_data	Fetch Data from RCSB PDB Using a JSON Query
find_papers	Search for and Retrieve Paper Titles from PDB
find_results	Retrieve Specific Fields for Search Results from RCSB PDB
generate_json_query	Generate a JSON Query for RCSB PDB Data Retrieval
get_fasta_from_rcsb_entry	Retrieve FASTA Sequence from PDB Entry or Specific Chain
get_info	Retrieve Information for a Given PDB ID
get_pdb_api_url	Generate a PDB API URL
get_pdb_file	Download and Process PDB Files from the RCSB Database
handle_api_errors	Handle API Errors
infer_search_service	Infer the Appropriate Search Service for RCSB PDB Queries
InOperator	Create an Inclusion Search Operator
parse_fasta_text_to_list	Helper Function: Parse FASTA Text to List Grouped by Header
parse_response	Parse API Response
perform_search	Perform a Search in the RCSB PDB
QueryGroup	Create a Grouped Query Object for RCSB PDB Searches
QueryNode	Create a Query Node for RCSB PDB Searches
query_search	Search Query Function
RangeOperator	Create a Range Search Operator
RequestOptions	Define Request Options for RCSB PDB Search Queries
return_data_as_dataframe	Convert RCSB PDB Response Data into a Dataframe
ScoredResult	Create a Scored Result Object for PDB Searches
search_graphql	Perform a GraphQL Query to RCSB PDB
send_api_request	Send API Request to a Specified URL
SeqMotifOperator	Create a Sequence Motif Operator for RCSB PDB Searches
SequenceOperator	Create a Sequence Operator for Sequence-Based Searches
StructureOperator	Create a Structure Operator for Structure-Based Searches
walk_nested_dict	Recursively Walk Through a Nested Dictionary