Exact Spike Train Inference via L0 Optimization

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Documentation for package ‘LZeroSpikeInference’ version 1.0.3

• DESCRIPTION file.

Help Pages

LZeroSpikeInference-package	LZeroSpikeInference: LZeroSpikeInference: A package for estimating spike times from calcium imaging data using an L0 penalty
cv.estimateSpikes	Cross-validate and optimize model parameters
estimateSpikes	Estimate spike train, underlying calcium concentration, and changepoints based on fluorescence trace.
LZeroSpikeInference	LZeroSpikeInference: LZeroSpikeInference: A package for estimating spike times from calcium imaging data using an L0 penalty
plot.cvSpike	Plot mean squared error vs. tuning parameter from the cross-validation output
plot.estimatedSpikes	Plot the solution to an L0 segmentation problem
plot.simdata	Plot simulated data
print.cvSpike	Print CV results
print.estimatedSpikes	Print estimated spikes
print.simdata	Print simulated data
simulateAR1	Simulate fluorescence trace based on simple AR(1) generative model