Matrix eQTL: Ultra Fast eQTL Analysis via Large Matrix
Operations
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Documentation for package ‘MatrixEQTL’ version 2.3
- DESCRIPTION file.
- Code demos. Use demo() to run them.
Help Pages
| MatrixEQTL-package | Matrix eQTL: Ultra Fast eQTL Analysis via Large Matrix Operations |
| as.matrix-method | Class 'SlicedData' for storing large matrices |
| colMeans-method | Class 'SlicedData' for storing large matrices |
| colnames-method | Class 'SlicedData' for storing large matrices |
| colnames<--method | Class 'SlicedData' for storing large matrices |
| colSums-method | Class 'SlicedData' for storing large matrices |
| Covariates | Artificial data for Matrix eQTL sample code: Covariates. |
| dim-method | Class 'SlicedData' for storing large matrices |
| GE | Artificial data for Matrix eQTL sample code: Gene expression. |
| geneloc | Artificial data for Matrix eQTL sample code: Gene location file. |
| length-method | Class 'SlicedData' for storing large matrices |
| MatrixEQTL | Matrix eQTL: Ultra Fast eQTL Analysis via Large Matrix Operations |
| MatrixEQTL_cis_code | Sample code for cis/trans-eQTL analysis with Matrix eQTL |
| Matrix_eQTL_engine | Main function for fast eQTL analysis in MatrixEQTL package |
| Matrix_eQTL_main | Main function for fast eQTL analysis in MatrixEQTL package |
| modelANOVA | Constant for 'Matrix_eQTL_engine'. |
| modelLINEAR | Constant for 'Matrix_eQTL_engine'. |
| modelLINEAR_CROSS | Constant for 'Matrix_eQTL_engine'. |
| NCOL-method | Class 'SlicedData' for storing large matrices |
| ncol-method | Class 'SlicedData' for storing large matrices |
| NROW-method | Class 'SlicedData' for storing large matrices |
| nrow-method | Class 'SlicedData' for storing large matrices |
| plot.MatrixEQTL | Plot histogram or QQ-plot of all p-values |
| rowMeans-method | Class 'SlicedData' for storing large matrices |
| rownames-method | Class 'SlicedData' for storing large matrices |
| rownames<--method | Class 'SlicedData' for storing large matrices |
| rowSums-method | Class 'SlicedData' for storing large matrices |
| show-method | Class 'SlicedData' for storing large matrices |
| SlicedData | Class 'SlicedData' for storing large matrices |
| SlicedData-class | Class 'SlicedData' for storing large matrices |
| SNP | Artificial data for Matrix eQTL sample code: Genotype. |
| snpsloc | Artificial data for Matrix eQTL sample code: SNP location file. |
| summary.SlicedData | Class 'SlicedData' for storing large matrices |
| [[-method | Class 'SlicedData' for storing large matrices |
| [[<--method | Class 'SlicedData' for storing large matrices |