| morseTKTD-package | The 'morseTKTD' package. |
| build_dN | build sub-dataframe of Nsurv without NA |
| build_dX | build sub-dataframe of concentration without NA |
| build_priors | Create a list giving data to use in Bayesian inference. |
| build_stanData | Create a list giving data to use in Bayesian inference. |
| cadmium1 | Reproduction and survival data sets of chronic laboratory toxicity tests of cadmium with Daphnia |
| cadmium2 | Reproduction and survival data sets of chronic laboratory toxicity tests of cadmium with snails |
| CheckData | Set of function to test conformity of data |
| checking_table | Set of function to test conformity of data |
| check_concentration | Set of function to test conformity of data |
| check_concNsurv | Set of function to test conformity of data |
| check_Nsurv | Set of function to test conformity of data |
| check_time | Set of function to test conformity of data |
| check_TimeNsurv | Set of function to test conformity of data |
| chlordan | Reproduction and survival data sets of chronic laboratory toxicity tests of chlordan with Daphnia |
| ComputePredictSurvFit | Compute post value on object |
| compute_Ninit | Compute post value on object |
| compute_Nsurv | Compute post value on object |
| compute_Nsurv.SurvPredict | Compute post value on object |
| copper | Reproduction and survival data sets of chronic laboratory toxicity tests of copper on Daphnia |
| dichromate | Survival data set of chronic laboratory toxicity tests of dichromate with Daphnia |
| Extract | Extraction methods to recover output of fit object. |
| extract_Nsurv_ppc | Extraction methods to recover output of fit object. |
| extract_Nsurv_sim | Extraction methods to recover output of fit object. |
| extract_param | Extraction methods to recover output of fit object. |
| fit | Fits a TKTD model for survival analysis using Bayesian inference |
| fit.SurvDataCstExp | Fits a TKTD model for survival analysis using Bayesian inference |
| fit.SurvDataVarExp | Fits a TKTD model for survival analysis using Bayesian inference |
| FOCUSprofile | A simulated exposure profile with 11641 time points using FOCUS model. |
| group_array | build array with indices of rows |
| is.between | Set of function to test conformity of data |
| is_exposure_constant | Set of function to test conformity of data |
| LCxt | Predict Lethal Concentration at any specified time point. |
| lcxt | Predict Lethal Concentration at any specified time point. |
| lcxt.SurvFit | Predict Lethal Concentration at any specified time point. |
| LPxt | Lethal Profile calculation |
| lpxt | Lethal Profile calculation |
| lpxt.SurvFit | Lethal Profile calculation |
| ModelData | Create a list giving data to use in Bayesian inference. |
| modelData | Create a list giving data to use in Bayesian inference. |
| modelData.SurvData | Create a list giving data to use in Bayesian inference. |
| morseTKTD | The 'morseTKTD' package. |
| plot.LCxt | Plot of the LCxt object |
| plot.LPxt | Plot of the LPxt object |
| plot.PPC | Plot an object 'PPC' |
| plot.PriorPosterior | Plot of Prior and Posterior distributions |
| plot.SurvDataCstExp | Plotting method for 'survDataVar' objects |
| plot.SurvDataVarExp | Plotting method for 'survDataVar' objects |
| plot.SurvFit | Fits a TKTD model for survival analysis using Bayesian inference |
| plot.SurvPredict | Plotting method for 'SurvPredict' objects |
| PlotData | Plotting method for 'survDataVar' objects |
| PlotLCxt | Plot of the LCxt object |
| PlotLPxt | Plot of the LPxt object |
| PlotPPC | Plot an object 'PPC' |
| PlotPredictSurvFit | Plotting method for 'SurvPredict' objects |
| PlotPriorPosterior | Plot of Prior and Posterior distributions |
| PPC | Posterior predictive check methods |
| ppc | Posterior predictive check methods |
| ppc.SurvFit | Posterior predictive check methods |
| predict | Prediction base on 'SurvFit' objects |
| predict.SurvFit | Prediction base on 'SurvFit' objects |
| PredictSurvFit | Prediction base on 'SurvFit' objects |
| predict_cstIT | Prediction base on 'SurvFit' objects |
| predict_cstSD | Prediction base on 'SurvFit' objects |
| predict_SurvFitCstExp | Prediction base on 'SurvFit' objects |
| predict_SurvFitVarExp | Prediction base on 'SurvFit' objects |
| predict_varIT | Prediction base on 'SurvFit' objects |
| predict_varSD | Prediction base on 'SurvFit' objects |
| PriorPosterior | Return Prior and Posterior density of parameters of 'SurvFit' object |
| priorPosterior | Return Prior and Posterior density of parameters of 'SurvFit' object |
| priorPosterior.SurvFit | Return Prior and Posterior density of parameters of 'SurvFit' object |
| priors_distribution | Extraction methods to recover output of fit object. |
| priors_distribution.SurvFit | Extraction methods to recover output of fit object. |
| propiconazole | Survival data set of chronic laboratory toxicity tests of propiconazole with Gammarus pulex |
| propiconazole_pulse_exposure | Survival data set of chronic laboratory toxicity tests of propiconazole with Gammarus pulex |
| SurvData | Creates a data set for survival analysis |
| survData | Creates a data set for survival analysis |
| survData.data.frame | Creates a data set for survival analysis |
| SurvDataCheck | Checks if an object can be used to perform survival analysis |
| survDataCheck | Checks if an object can be used to perform survival analysis |
| SurvFit | Fits a TKTD model for survival analysis using Bayesian inference |
| survFit_TKTD_params | Table of posterior estimated parameters |
| SurvIT_cst | Internal predict function |
| SurvIT_var | Internal predict function |
| SurvSD_cst | Internal predict function |
| SurvSD_var | Internal predict function |
| update.LPxt | Lethal Profile calculation |
| zinc | Reproduction and survival data sets of a chronic laboratory toxicity tests of zinc with Daphnia |