| GANPA-package | Gene Association Network-based Pathway Analysis |
| GANPA | Gene Association Network-based Pathway Analysis |
| GSE.Test.Main | Gene-weighted pathway significance analysis |
| weight.gsets.test | Weight genes in pathways with a gene association network |
| weight.gsets.with.msprot | Weight genes in pathways with a gene association network after correction for multi-subunit proteins |