| MonoPhy-package | Explore Monophyly of Taxonomic Groups in a Phylogeny. |
| AssessMonophyly | Assesses monophyly (or lack of it) of taxonomic groups in a phylogeny. |
| CollapseMonophyletics | Get tree with collapsed monophyletic groups |
| Ericacsubfams | Example dataset for the package MonoPhy. |
| Ericactree | Example dataset for the package MonoPhy. |
| Ericactribes | Example dataset for the package MonoPhy. |
| GetAncNodes | Get MRCA nodes of taxonomic groups from 'AssessMonophyly' output |
| GetIntruderTaxa | Get taxa or tips which are intruders or outliers to a taxon from AssessMonophyly |
| GetIntruderTips | Get taxa or tips which are intruders or outliers to a taxon from AssessMonophyly |
| GetOutlierTaxa | Get taxa or tips which are intruders or outliers to a taxon from AssessMonophyly |
| GetOutlierTips | Get taxa or tips which are intruders or outliers to a taxon from AssessMonophyly |
| GetResultMonophyly | Get main result table from 'AssessMonophyly' output |
| GetSummaryMonophyly | Get main result table from 'AssessMonophyly' output |
| MonoPhy | Explore Monophyly of Taxonomic Groups in a Phylogeny. |
| MonophylyData | Example dataset for the package MonoPhy. |
| PlotMonophyly | Plot output of AssessMonophyly |