| dbCreateIndexes | Create indexes in SEND database |
| dbCreateSchema | Create a SEND schema in an open and empty database |
| dbDeleteStudies | Delete one or more studies in SEND database |
| dbImportOneStudy | Import SEND study data in SAS xport format into a SEND database from a single study folder |
| dbImportStudies | Import SEND study data in SAS xport format into a SEND database from a hierarchy study folders. |
| disconnectDB | Disconnect from the open database. |
| execSendDashboard | Execute sendDashboard app |
| genericQuery | Execute database query and returns fetched rows. |
| gen_vocab | Create json file for vocabulary mappings. Keys are synonyms and values are the CDISC Controlled Terminology Submission values. Vocabularies are defined by column values from the tab-delimited files. |
| getControlSubj | Extract a list of control animals for a list of studies |
| getFindingsPhase | Extract a set of findings for a specified study phase - or just add phase for each animal. |
| getFindingsSubjAge | Add the subject age at finding time - and optionally extract the set of findings within a specified range of age. |
| getStudiesSDESIGN | Extract a list of SEND studies with a specified study design - or just add actual study design for each study. |
| getStudiesSTSTDTC | Extract a list of SEND studies with study start date within a specified interval - or just add actual study start date for each study |
| getSubjData | Extract data from a subject level domain. |
| getSubjRoute | Extract the set of animals of the specified route of administration - or just add actual route of administration for each animal. |
| getSubjSex | Extract the set of animals of the specified sex - or just add the sex of each animal. |
| getSubjSpeciesStrain | Extract the set of animals of the specified species and strain - or just add the species and strain for each animal. |
| getTabColLabels | Get labels for columns in a data.table |
| initEnvironment | Initialize the environment. |
| standardize_file | Standardizes SEND xpt files using CDISC controlled terminologies |