Graphical Visualizations Related to Genomic Prediction

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Documentation for package ‘GPflexViz’ version 1.0.0

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example_data1 gwas_data with all chromosome information This contains Single nucleotide polymorphism (SNP) information.
example_data10 regression_data This contains estimation and p value data from a/the regression summary output/s.
example_data11 CI_data This contains individual level data for constructing confidence intervals
example_data2 gwas_data with partial chromosome information This contains Single nucleotide polymorphism (SNP) information.
example_data3 accuracy_data with full information This contains prediction accuracy related information.
example_data4 accuracy_data with partial information This contains prediction accuracy related information.
example_data5 comparison_data This contains prediction accuracy related information for model comparison.
example_data6 accuracy_diff_data This contains prediction accuracy related information for detailed model comparison (2 methods at a time).
example_data7 ld_data This contains Linkage Disequilibrium (LD) related data (e.g. pair-wise variant correlation squared).
example_data8 distribution_data This contains data for consruction of histograms/density plots, with at least 1 column.
example_data9 correlation_matrix A 20x20 symmetric matrix containing correlation coefficients between various variables (e.g. varients, individuals).
flex_accuracy flex_accuracy function
flex_accuracy_diff flex_accuracy_diff function
flex_accuracy_diff2 flex_accuracy_diff2 function
flex_boxplot flex_boxplot function
flex_correlation_plot flex_correlation_plot function
flex_distribution flex_distribution function
flex_interval flex_interval function
flex_LD_decay flex_LD_decay function
flex_manhattan flex_manhattan function
flex_qqplot flex_qqplot function
flex_regression_summary flex_regression_summary function