Last updated on 2025-07-18 03:51:39 CEST.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [79s/147s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.447, system: 0.038, elapsed: 4.730 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.947, system: 0.090, elapsed: 20.118 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.181, system: 0.013, elapsed: 0.274 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.711, system: 0.182, elapsed: 6.012 seconds]
Computing values for grid cells...
... done. [user: 0.165, system: 0.003, elapsed: 0.207 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.000, system: 0.347, elapsed: 32.689 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.464, system: 0.032, elapsed: 1.939 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.920, system: 0.065, elapsed: 12.711 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.184, system: 0.010, elapsed: 0.278 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.709, system: 0.155, elapsed: 6.115 seconds]
Computing values for grid cells...
... done. [user: 0.165, system: 0.002, elapsed: 0.216 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 14.981, system: 0.282, elapsed: 22.016 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.504, system: 0.034, elapsed: 2.554 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.926, system: 0.064, elapsed: 16.192 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.185, system: 0.013, elapsed: 0.327 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.671, system: 0.184, elapsed: 5.707 seconds]
Computing values for grid cells...
... done. [user: 0.162, system: 0.003, elapsed: 0.286 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.136, system: 0.221, elapsed: 1.185 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.231, system: 0.542, elapsed: 27.304 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.442, system: 0.030, elapsed: 2.369 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.986, system: 0.066, elapsed: 14.097 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.189, system: 0.014, elapsed: 0.317 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.723, system: 0.183, elapsed: 7.963 seconds]
Computing values for grid cells...
... done. [user: 0.164, system: 0.003, elapsed: 0.473 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.342, system: 0.471, elapsed: 26.005 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 25.515, system: 0.802, elapsed: 52.501 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [79s/119s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.529, system: 0.042, elapsed: 4.255 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.527, system: 0.052, elapsed: 14.033 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.184, system: 0.013, elapsed: 0.309 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.705, system: 0.192, elapsed: 6.311 seconds]
Computing values for grid cells...
... done. [user: 0.166, system: 0.006, elapsed: 0.350 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 14.663, system: 0.327, elapsed: 26.520 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.521, system: 0.030, elapsed: 2.465 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.107, system: 0.056, elapsed: 13.802 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.185, system: 0.012, elapsed: 0.275 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.794, system: 0.172, elapsed: 5.690 seconds]
Computing values for grid cells...
... done. [user: 0.163, system: 0.003, elapsed: 0.196 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.319, system: 0.300, elapsed: 23.303 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.508, system: 0.029, elapsed: 1.905 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.217, system: 0.069, elapsed: 12.511 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.185, system: 0.011, elapsed: 0.296 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.603, system: 0.161, elapsed: 5.604 seconds]
Computing values for grid cells...
... done. [user: 0.171, system: 0.003, elapsed: 0.237 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.082, system: 0.214, elapsed: 0.948 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.415, system: 0.525, elapsed: 22.419 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.477, system: 0.030, elapsed: 1.823 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.165, system: 0.053, elapsed: 12.123 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.184, system: 0.011, elapsed: 0.313 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.588, system: 0.176, elapsed: 5.062 seconds]
Computing values for grid cells...
... done. [user: 0.157, system: 0.003, elapsed: 0.162 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 9.818, system: 0.495, elapsed: 14.204 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 25.038, system: 0.800, elapsed: 34.577 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-x86_64